PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_E9D675FAC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 540aa    MW: 63073 Da    PI: 7.3115
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_E9D675FAC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.93.3e-2311104291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                            fYn+Y+ e GFsvr+s+ +    n +i+ r+fvCs+eg ree++ k   ++++r++r+ t +gCkakl++ +++ + +w v+++  eH
  Traes_5DS_E9D675FAC.1  11 FYNKYGLEKGFSVRRSYVEWDGSNCHIILRKFVCSREGVREEKHMKrkmEDRKRTPRSITCVGCKAKLVIARQEeTCQWFVKDFIDEH 98 
                            ******************************************99988878889999****************99899*********** PP

                   FAR1  86 nHelap 91 
                            nH+lap
  Traes_5DS_E9D675FAC.1  99 NHPLAP 104
                            ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-2111104IPR004330FAR1 DNA binding domain
PfamPF105511.0E-35225319IPR018289MULE transposase domain
PROSITE profilePS509668.716503538IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MFNSEDEGYT FYNKYGLEKG FSVRRSYVEW DGSNCHIILR KFVCSREGVR EEKHMKRKME  60
DRKRTPRSIT CVGCKAKLVI ARQEETCQWF VKDFIDEHNH PLAPRDLSCL LRSHSRISDE  120
QKADIADMEK SGIRKLHIVD IMCMQYGGYD EVGCIMRDIY NFCHANKQET ISSGDAQTVI  180
NHMVARQEQD SDFFFRYLVD EAGYLKGLFW SDSQSRLDYE ASGDVIVFDS TYRTNKYNLP  240
FVPFVGLNHH RSTVIFACGI ISHQTSQAYE WMLQTFSDAM GQKHPISVIT DGDLAMQRAI  300
RVVWPDSNHR LCIWHIQQNI VRHLHDDAVK EEFRSFIYDT SSIEEHERKW LHFLQRNKVT  360
SEDSWLHQMY KMRKLWCAPY LKGRCFLGLN SNQRSESLNS VLNTHLEAKM TLFQMLEHYE  420
HCLASRRLNE ALQDVEALQS VPFTEENSSV LEKHAMKFFT PAVFKLVLWS IDVVKKCEIR  480
EVLDAAEVTT YVVSKKERMD KKIEVRTESK EGLLRSISCS CRKLECAGTP CSHIFYILGI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5G4L10.0W5G4L1_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-91FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]